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ATTENTION : Thursday, August 21 an operation is planned on the database server
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Schedule > Oral contributionsAccepted oral communications are the following: Proceedings: Tuesday July 5th Exploring variability of machine learning methods : first step towards biomarker consensus signatures Optimal Scaffolding for Chloroplasts’ Inverted Repeats Genomic adaptation of the picoeukaryote Pelagomonas calceolata to iron-poor oceans revealed by a chromosome-scale genome sequence Adaptive splines-based logistic regression with a ReLU neural network Detection and correction of non-conformities and redundancies in complexes of molecules in BioPAX Gene Expression prediction using Deep Learning VOCAL: An early warning system to detect concerning new SARS-CoV-2 variants from sequencing data Wednesday July 6th kmtricks: creating bloom filters for indexing large sequencing data collections Analysis of SARS-CoV-2 and human protein interactions: a CAPRI-COVID Round Comprehensive multi-omics integration of major depressive disorder Thursday July 7th Single-cell RNA sequencing reveals aberrant megakaryocyte-erythroid progenitor and megakaryocyte populations in thrombocytopenic ETV6 variant carriers Condition-specific and recurrent perturbation-communities in multiple differential co-expression networks Improving the accuracy of small variant calling with ensemble machine learning methods LowKi: Efficient estimation of kinship and fraternity coefficients from low-depth sequencing data Uncovering specific alterations of ribosomal RNA 2'O-ribose methylation in glioma subtypes using the latest improvements of RiboMethSeq technology Friday July 8th Insertion of Alu elements impacts sequence-mediated nucleosome positioning Overcoming small and incomplete datasets limitations in multi-omic integration Interaction between gene expression and chromatin environment: application to the study of H3K79me2 and its methyltransferase DOT1L during spermatogenesis Discovery of potential functional paths by integration of phospho-proteomics data in the PPI network using a RWR framework KinDock 2.0: A robust protein-kinases virtual screening tool enhanced by machine learning predictors.
Highlights: Tuesday July 5th GraphGONet: a self-explaining neural network encapsulating the Gene Ontology graph for phenotype prediction on gene expression (link) FORUM: Knowledge Graph (KG) for semantic representation and inference of relations between chemicals and biomedical concepts (link) GC content but not nucleosome positioning directly contributes to intron-splicing efficiency in Paramecium (link) TopoFun: a machine learning method to improve the functional similarity of gene co-expression modules (link) Biosynthetic potential of the global ocean microbiome (link) findere: fast and precise approximate membership query (link) Wednesday July 6th Genotyping multiscale variation with genome graphs (link) Tree Diet: Reducing the Treewidth to Unlock FPT Algorithms in RNA Bioinformatics (link) Inference of an Integrative, Executable Network for Rheumatoid Arthritis Combining Data-Driven Machine Learning Approaches and a State-of-the-Art Mechanistic Disease Map (link) Conformational variability in proteins bound to single-stranded DNA: A new benchmark for new docking perspectives (link) Calcium signaling is impaired in PTEN-deficient T cell acute lymphoblastic leukemia (link) Assessing conservation of alternative splicing with evolutionary splicing graphs (link) Thursday July 7th Computing disease progression scores using multimodal variational autoencoders trained with neuroimaging and microRNA data (link) Friday July 8th Pseudoquantifying hundreds of proteins in millions of single cells (link) Investigating ADR mechanisms with Explainable AI: a feasibility study with knowledge graph mining (link) Effect of quercetin on lipid membrane rigidity: assessment by atomic force microscopy and molecular dynamics simulations (link) Semantic Web technologies are effective to remove redundancies from protein-protein interaction databases and define reproducible interactomes (link) Platforms: Tuesday July 5th UseGalaxy.fr: a Galaxy server for the French bioinformatics community EMERGEN-BioInfo : The digital platform for the French SARS-CoV-2 genomic surveillance and research program Thursday July 7th Bioinformatics platforms and data management : the GenOuest experience Linda: an interactive framework for experimental design and management of metadata Improving clinical diagnosis using Nanopore Adaptive Sampling and NanoCliD
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